CDS
Accession Number | TCMCG057C14641 |
gbkey | CDS |
Protein Id | XP_018475608.1 |
Location | complement(join(28760554..28760625,28760723..28760791,28760870..28760947,28761037..28761103,28761190..28761294,28761391..28761911,28761995..28762170,28762347..28762969,28763140..28763708,28763820..28764005,28764125..28764826,28764910..28765153,28765385..28765525,28765616..28766592,28766720..28767832,28767918..28767956)) |
Gene | LOC108846927 |
GeneID | 108846927 |
Organism | Raphanus sativus |
Protein
Length | 1893aa |
Molecule type | protein |
Topology | linear |
Data_file_division | PLN |
dblink | BioProject:PRJNA344915 |
db_source | XM_018620106.1 |
Definition | PREDICTED: E3 ubiquitin-protein ligase PRT6-like isoform X1 [Raphanus sativus] |
EGGNOG-MAPPER Annotation
Sequence
CDS: ATGGAGACCAACTCGCGTGCACATGATTTTCTCCTCAAGAGGCTTGCTTCTATTGGGGTCCCTAAGAAATGCTGTTCCAAACGTGGCCTAGTGGAATTCGTTAGAGCTAACCGATCCAGGATCTCGGAGCTCGTCTCTGCTCTCTTACCTACCGATGAGGATGTTAAAGCTGTACTGAAGGGAACTAAGGAACAGCCTCACAAGTCTGCGGTGAGTCCCACCATGAAAAAGAGGTTCAGGGAGAGCATGAGTTGGCTGCAGTGGCTCATGTTCCAGGACGAGCCTCGTGTTTCCTTGAAGAATCTTGCGAAATCGAATGTTGATCAGCAGCGAGGTGTCTGTGGCTCCGTCTGGGGAGAACATGATATAGCGTATCGGTGCAGAACGTGCGAGAATGACTCGAGTTGTGCGATCTGCGTGTCTTGTTTCGAGAATGGTGATCACAGCTCCCACGATTATTCCATCATGTACACCAACGGTGGTTGTTGTGATTGTGGGGATGATACAGCCTGGAAAAAAGATGGTTTCTGTTCGAATCATAAAGGTTCCGAGCAGATTCAACCCCTCTCAGAGACTCTAGCAGAGTCGGTTGGGCCTGTACTTGATGCTCTTTTTACTTGTTGGAATAGCAGGCTCGTATCTGCAGAGAGTGTTTGTGAGAACGATGCGAGATCCAACGATACTCTTGCTGTACACCAAAAGATGTCAAACGAGCTGACATTCGTAGTGGTTGAAATGCTTCTGGGGTTTTATAAGTCTAGTGAGAGTCTGCTAAGTTTTGTTTCTAGAAGGATGGTCGCTTCAAGTGGTCTATTGATGATTCTCGTAAAGGCTGAGGGGTTCTTGGACAAAGATGTTATGGAGAAACTACACGACTTGCTCCTCAAATTGATAGGAGATCCCGTCTTTAAGTCGGAATTTGCGAAAGCGCTTGTGAGTTACTATCCACTTGGCATTAGTGAAGCGGTTAAGAATGGTCATGATCATGCATTCATGCAATATCCTCCACTGATGTCTTTGTTTTCTGTGCAATTCTTCACGGTGCCGACTCTAACAGCATTTCTGGTGAAGGAAATGAATCTGCTAGCAATGCTTTTGGGATGCCTCAATGATATCTTTCTTTCTTGTTGTGGGGAGGATGGTGTGCTACAGGTTACAAAGTGGGAAGAGTTGTATGAGACAGGTGAGCGTGTCATTCGAGACTTGAAATATGTTACGTGCCATCCTGTAGTTTCTAAGTACGCAACAAATGAAGATCGGGAGTTATCAAGATCATGGTTGGTACTCTTGACCTTTGCTCAAGGAATGGATCCTCTGAAAAGAGAGACTGGAATCCATATTGAAGAAGAAAATGAGAGCGCGCATATGTTCTTTGAGTTGAGTCATTCAATAGCTGCTATTCACTTTCTGTTGGTTAACGGTACATACTCTCCTGCCAGTGATGAACAAATAGAAAATGAGAGAACCACCAAGGCTAGACTAGATAATTGTGATGGAGATGGAGAAAGGCATGCAAAAGTTGGGAGATTGTCTCATGAAGATTCCGTATGTACCGCGATGATAAAGAGCAGATCCTTTGATAGCTCGATGGCTTCTGAAGTCCACGAAATTGACGCTCTCCATGCCCTGATTCCTTCTTCTGCCATATGGTTGATACGCGAGTGTTTGAACGTTCTGGAGACATGCTTAGGAAATGATGAAGGTATATCAAAATTTATGTGCAAGTTTGTGTCTCCTAGCGGCAACTCTTCCGATCCGACGAAAAATGCATCAGGAGTACATATGTTTGGTCTGTGTGATTGGCCGGACATCCACTACGATGTGAGCCTTCAGGCCATATCAATCCATCTACCGTTACACCGGTTACTTTCTTTGCTCATAGAAAAAGCATTAAGGTTGTGTTATGGAGAATCTGCCTTGCACCATGGAGTCAGTGTTAGTCTTGAGATCCCACAGGCGGACTTCTTCAGCTATGTGTTCGGAGATTTCCATCCTTGTGGCTTTTCTGCACTTGTTATGGAGCATGTTCTCCGGGTAAGGGTGTTCTGTGCCCAAGTTATTGCTGGAATGTGGAAGAAGAATGGGGATCCTCCATTAGTATCTTGTGAGTGGTATAGGTCAGTTCGTTGGTCAGAACAGGGACTTGAGCTTGATCTATTTCTCTTGCAGTGTTGTGGTGCGTTGGCTCCTGCTGATTCTTATGTTAATAAGCTTCTCAGTCGATTTGGGCTCTCGAGCTATCTTTCACAAAGCCCTGATAGAACAAATGAGTATGAACCAGTTTTGGTCCAGGAAATGCTTGCTCTTTTGATACAGATTCTGCAAGAAAGGCGTTTTTGTGGTCTTTCTACTGCTGAAAGTTTGAGAAGAGAGATCATCTGCAAGTTGGCTACTGGAGATTTCACTCGTAGTAAATTGGTCAAATCTTTACCCCGTGATCTCTCCAAGTCGGATGAGCTCCAAGAGGTCTTAGATAACGTTTCAGTCTATTGTAATCCATCCGGCATGAACCAGGGAAAGTATTCACTACGGCCATCTTGTTGGAAGGAATTGGATCTCTATCACCCTCGTTGGCATTCAAGAGAATTGCAATCTGCAGAAGAAAGGTTTTCGCGCTATTGTGGAGTGTCTGCCTTGTCAACTCAGCTTCCTAGGTGGCGAATGATCTATCCGCCTCTAAATGGGCTTTCGAGAATAGGAACTTGCAAAACCACTTTTCAAATCATTTCCTCTGCTTTATACTACGCACTACAGAGTGGTACCTCTGTTAAATCACGTGCTCCAGATGGCGTTCTCATAACCGCTTTGCACTTACTCTCGCTATCATTGGATATTTGCTCTCAGCAAAGGGAATCTAATACTCAGGCTTGCTGCGTAGAAGATTCAATTCCGCTTCTCGAATTAGCTGGTCTGGAATTAATGGGTATAAATCAAGGGACTGGAAGAGAAAGTTTGTTGTCTCTTCTTGTCTCATTAATGAGGACTCGTAAAGACGATGGTCTCCGTCAATTTCCAGAGGCAGGTAGTTGCAATATTTCGTCCTGGATTGGAGAATTGCTGAAGAAGTTCAGTGCAATTGATTCTGTCTGTATGAACCTATTGCAAAGTCTTGCCCCGGAGGTGGTTGGTCAATCTGGATTTGATAAAGTCACATCAGGCTCTACTTCTGATGAGAAACGCAAGGCTAAAGCTAGAGAGAGGCAGGCTGCTATTCTGGCAAAAATGAAAGCTGAACAAACAAAATTCTTGTCCAGCATGGATGATGATGATCCGAGATCTGAAACTGAAACAACAAGTGATTCCGTAATGGAACAGGATTCAGAAATTGCTGTTCGTGAAGTTTGCTCTCTCTGCCATGACCCAGATTCCAAAGACCCGGTTTCTTACTTGATTTTTCTCCAGAAATCTAAAATCTTGAGTTTTGTGGATAGAGGCCCTCCATCTTGGGATCAAGGTCCACAGTCAGAAAAGAATATGTCTGTTGATGGAGTTGGCGATGTCCTGAGAAGTAATGTCTCCTCAGATAGTTCAATGATTCCTCATGATGCAACCTCTGAGCCTGCTACAGATTCCGTGTTTGAAGCTTTAACAACCCGGCTTATAAGGAATAGTCAGAGGGAGAAGAGGTCTAGTGATGGGAGGGGAAAAGATGAATCTAACATGGAATCAATGGAGATAGCTATGTATCAAACCGTTCGCAGGAAAATTGATAACATTACAAATCAAAGCCTTACACATGTAGATCAACGACCGCATGCTGCTGAGAGTATTTCGGAGAGAAATCGTGTTACTGGTCTATCTACTTTGCAAGTTAGAGTTCCTGATACTCGATCAAGACAAACCTCCAGACATTCGGATGTCGGTTCAGATGGGTTTCACCCTACTGACTGTGATGGTGTTTATCTTTCATCATGTGGACATGCTGTGCATCAAAGCTGTCTTGAACGATATTTAAAGTCGTTAAGGGAGAGCTCTGGGGAATTTCTCTGTCCTGCATGCCGGGGACTAGCTAATTCTGTATTGCCTGCATGTCCCCGAGATTTATGTTCTGTCTCAAGGAAACAGGAAAGTTCGCATGCCAAGTTAGGTAAATCAAATGCACAGATGCCTTCGCTTTGGCTCTCTGAAGCGTTGTGTCTGCTACGATCTGCGGCTGACGTGATCGAAGACGGTGATAGCGTTAGAACAGTTTCTCTGCAGGGAGCCGAACCAAGAAGGAAAGATCTTGAATCTGTCTCTAACAAGCTCTGGAATTTCTATTTTTCTAAGCGACAGGGAAAATTTCCGGGAAGTCATTGGGTATCACAATCAATCGTTATGTGGGACACCCTTAAGTACTCACTTATTTCAATGGAAATTAATACTCGCCGTGCGAAGAGTTCAATGCTTCCTGTGTATTGTGTTGACTCCTTGTATGAAGAGTTAAATACCTCCAAGGGAACTGCTTTGTCACTCTTATTACGAGTGGTACAGAGCACCCGAACAAAGAATGCTTTACATGTCTGTCAGAGATTTATGGGCATGAAGCATCTGGCAGAGTCTATATGCTTTGGAATTTCAAGTTCTCCTTCGAGCAGCATTTTTGGAAGCGAAGCAGGTTCACTGAAGAATATAAACCTGCTCTGGAATCGAGCATCTGATCCAGTTCTTTCCCATGACCCATTTTCATCACTGATGTGGGCTCTTTTTTGTCTCCCTTCTCCTTTCATCACATGCAAGGAATCTCTATTATCGCTTGTGCATATCTTCTACGGTGTGTCTCTTGTTCAGACTGTAATCGCCTATTGCGCAGGTCGCATGTTTGACTTGAGTAAATTAGAATTCGAGGAAAACCTGCTTAGCGACATCCCCACCGTTTTGAGAGAATCAGGTGGTTGGGAGTATTTCAGGTCTAACAATATGGATTTATCATGTGAGTTAAAAGAGACTATCCGTAGCTATAGTCTTCCTTTCTTGAGGAGATGTGCATTGCTGTGGAGGCTACTGAAAACTACTTCTGGGAAGTGTCATGAAAAGGAAGATATGTTTGATGTGCCGTCTGACTCCACCAGCGACAACATGCATTCCCAGTCGGAGCTGAATCATGTGAATGAATTGGAGAAAATGTTCAAGATCCCGCCTATTGATATCATTGTCAATGATGAACTTCTCCGGTCATCAACACAAACATGGCTTCGACATTTCCAGAAGGAATACAAAGCTAACAGAGTTAAAAGGCCTTTCTGCATAACACCTGTAGTTCCTTTCCAGCTTATGAAGTTACCCAATTTATACCAGGACCTATTGCGAAGGTATATCAAGAAACCTTGTAGCAACTGCAAGAAAGTTATGATAGATCCTGCATTGTGTCTTCTTTGCGGAAGATTGTGTTCTCCCATAATGCTGCCTTGTTGCAGTGAAAGTGATTGCCAGACTCATGCAGTCACCTGTTGTGCTGGTACTGGTGTATTTCTTCTGCTACGGGGGACCACGATTTGGCTACAAAGATTTGGAAGTCAATCATCTTGGTCATCTCTTTACTTGGATACGTTTGGAGAAGAGGATACCAATCTGTTAAGAGGAAAACCACTATACCTGAATGAAGAACGTTACGCTGCATTAACATACATGGTTGGTTCTCATGGACTCGATCACAGCTCCGAAGTTCTCAATCAAACCACCATCGAGACTTTCGTCATTTAA |
Protein: METNSRAHDFLLKRLASIGVPKKCCSKRGLVEFVRANRSRISELVSALLPTDEDVKAVLKGTKEQPHKSAVSPTMKKRFRESMSWLQWLMFQDEPRVSLKNLAKSNVDQQRGVCGSVWGEHDIAYRCRTCENDSSCAICVSCFENGDHSSHDYSIMYTNGGCCDCGDDTAWKKDGFCSNHKGSEQIQPLSETLAESVGPVLDALFTCWNSRLVSAESVCENDARSNDTLAVHQKMSNELTFVVVEMLLGFYKSSESLLSFVSRRMVASSGLLMILVKAEGFLDKDVMEKLHDLLLKLIGDPVFKSEFAKALVSYYPLGISEAVKNGHDHAFMQYPPLMSLFSVQFFTVPTLTAFLVKEMNLLAMLLGCLNDIFLSCCGEDGVLQVTKWEELYETGERVIRDLKYVTCHPVVSKYATNEDRELSRSWLVLLTFAQGMDPLKRETGIHIEEENESAHMFFELSHSIAAIHFLLVNGTYSPASDEQIENERTTKARLDNCDGDGERHAKVGRLSHEDSVCTAMIKSRSFDSSMASEVHEIDALHALIPSSAIWLIRECLNVLETCLGNDEGISKFMCKFVSPSGNSSDPTKNASGVHMFGLCDWPDIHYDVSLQAISIHLPLHRLLSLLIEKALRLCYGESALHHGVSVSLEIPQADFFSYVFGDFHPCGFSALVMEHVLRVRVFCAQVIAGMWKKNGDPPLVSCEWYRSVRWSEQGLELDLFLLQCCGALAPADSYVNKLLSRFGLSSYLSQSPDRTNEYEPVLVQEMLALLIQILQERRFCGLSTAESLRREIICKLATGDFTRSKLVKSLPRDLSKSDELQEVLDNVSVYCNPSGMNQGKYSLRPSCWKELDLYHPRWHSRELQSAEERFSRYCGVSALSTQLPRWRMIYPPLNGLSRIGTCKTTFQIISSALYYALQSGTSVKSRAPDGVLITALHLLSLSLDICSQQRESNTQACCVEDSIPLLELAGLELMGINQGTGRESLLSLLVSLMRTRKDDGLRQFPEAGSCNISSWIGELLKKFSAIDSVCMNLLQSLAPEVVGQSGFDKVTSGSTSDEKRKAKARERQAAILAKMKAEQTKFLSSMDDDDPRSETETTSDSVMEQDSEIAVREVCSLCHDPDSKDPVSYLIFLQKSKILSFVDRGPPSWDQGPQSEKNMSVDGVGDVLRSNVSSDSSMIPHDATSEPATDSVFEALTTRLIRNSQREKRSSDGRGKDESNMESMEIAMYQTVRRKIDNITNQSLTHVDQRPHAAESISERNRVTGLSTLQVRVPDTRSRQTSRHSDVGSDGFHPTDCDGVYLSSCGHAVHQSCLERYLKSLRESSGEFLCPACRGLANSVLPACPRDLCSVSRKQESSHAKLGKSNAQMPSLWLSEALCLLRSAADVIEDGDSVRTVSLQGAEPRRKDLESVSNKLWNFYFSKRQGKFPGSHWVSQSIVMWDTLKYSLISMEINTRRAKSSMLPVYCVDSLYEELNTSKGTALSLLLRVVQSTRTKNALHVCQRFMGMKHLAESICFGISSSPSSSIFGSEAGSLKNINLLWNRASDPVLSHDPFSSLMWALFCLPSPFITCKESLLSLVHIFYGVSLVQTVIAYCAGRMFDLSKLEFEENLLSDIPTVLRESGGWEYFRSNNMDLSCELKETIRSYSLPFLRRCALLWRLLKTTSGKCHEKEDMFDVPSDSTSDNMHSQSELNHVNELEKMFKIPPIDIIVNDELLRSSTQTWLRHFQKEYKANRVKRPFCITPVVPFQLMKLPNLYQDLLRRYIKKPCSNCKKVMIDPALCLLCGRLCSPIMLPCCSESDCQTHAVTCCAGTGVFLLLRGTTIWLQRFGSQSSWSSLYLDTFGEEDTNLLRGKPLYLNEERYAALTYMVGSHGLDHSSEVLNQTTIETFVI |